It won't hurt the seal, unless the circlip is out and the outer part of the bore is corroded.
The clutch lever arm, if worn that much will make the slave cylinder piston hit the circlip, this will limit clutch travel.
3 ways to avoid this (apart from the best, a NEW arm):
1. Remove the circlip, it serves no purpose once the cylinder is on the car.
or,
2. weld a bit of rod onto the pushrod to lengthen it 20mm.
or,
3. Heat and bend the top of the arm, towards the cylinder.
I do reckon your clutch arm is well past it, I throw them away when worn 1/2 that much.

_________________
DrMini- 1970 wasaMatic 1360, Mk1S crank, 86.6HP (ATW) =~125 @ crank, 45 Dellorto (38 chokes), RE282 sprint cam, 1.5 rockers, 11.0:1 C/R.
