Well it could be your clutch master cylinder. Get someone the press the clutch in while you watch the arm under the hood. If it travels out but slowly returns while the clutch pedal is stil down then it could be you clutch master that is gone. Either take it to a mini specialist for reconditioning and possibly resleaving or get a new one, available from ebay for about $145. The new plastic tank one ar good, i put one on my 1310 clubbie and i have never had a better cluch pedal.
http://cgi.ebay.com.au/Clutch-Master-Cy ... dZViewItem
Also make sure the clutch is adjusted properly ie. Use the search option in Ausmini for 'Clutch ajustment' there is no end of tips there. Of course you can consult you workshp manual
How long has it been since your last oil change. Sometimes when the oil losses its viscosity and the sycros (the things that help the box travel from gear to gear) and bearings dont travel as well. Change your oil and filter try somthing like Castrol Edge 25W50 this the oil recomended by most mini users in Ausmini. This also helped me when i was experiencing crunches in the box, essecially if you are experiencing more crunching when the engine is cold compared to hot.
Also remember that the mini gearbox you have if it hasn't been rebuilt before is about 40 years old. Go easy on it. try not to slam the gears in like most people do with their modern Jap cars. If the box is worn you may find that learning to 'double clutch' may help things. This involves pushing the clutch in twice while changing gears. For example once when traveling from first to neutral and again when traveling from neutral to second. If you are traveling down in gears it is helpful to just tap on the accelerator while going into the lower gear.
Hopefully drmini and some of the others with heaps of mini experience can offer advice ttoo.