yes , flywheels are tending to move further & further onto the cranks now-days,,, they`ve been on & off a few hundred times & go further & further on each time
machining the inside of the flywheel is becomming more & more common because of that
easy check (once the flywheel has been fitted) is to make sure the clutch plate actually spins free... stick a long thin screw driver in-between the flywheel & the backing plate & you will be able to "Jab" the edge of the clutch plate,,, then try to turn it
obviously you can`t have the tin-hat tightened up to do this , but it`s a simple test to make sure before bolting it all together & wondering why the clutch doesn`t diss-engage... then of course having to rip it all apart again to effect repairs
every engine should have this check done,,, whether you think you`re good or not,,, if you don`t do this simple check then you`re bonkers
so,,, if your clutch was diss-engaging,,, then i doubt that your flywheel was button-ing on the C-lock,,, more likely you had a lip from lapping as GT said,,, OR you just didn`t have it tight enough... Or maybe the key-washer was already cracked,,, or maybe your flywheel center was crap to start with,,,or,,,or,,,or ,,, but hey i`m not looking at your engine so i can`t really tell what your particular problem is,,, so go with what you can find/see/sort & try again